usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 20.172 -7.8282962962963 70.6185925925926 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2077 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1030 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1030 Number of spheres polar: 291, nonpolar: 488, out of current total: 1030 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.18886 30.16411 -17.79969 2.16718 60.66099 80.58595 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 344 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 297 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 285 Spheres center of coords (x y z): 17.1769679298246 -8.33292856140351 73.1805576140351 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.48853021393251 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 27