usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 34.4236428571429 39.3605 73.1643571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1104 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 738 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 736 Number of spheres polar: 219, nonpolar: 303, out of current total: 736 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.46972 44.39579 29.38796 49.34140 63.22574 83.12364 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 425 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 368 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 343 Spheres center of coords (x y z): 33.4616948396502 39.5724878717201 74.3235401166181 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.0495708445124 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 28