usefragsph not on
There are 29 ligand heavy atoms
Ligand center of coords (x y z): 42.216 53.0710344827586 78.465
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1030
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 693
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 693
Number of spheres polar: 198, nonpolar: 274, out of current total: 693
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 32.30428 52.14054 43.13330 63.02428 68.71200 88.10563
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 418
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 376
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 358
Spheres center of coords (x y z): 40.7566477374302 54.1610854469273 81.3916233798883
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.83044009810701
Final number of output spheres is: 60
Number of polar spheres: 21
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 29