usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 34.9451071428571 39.1238571428571 73.1168571428572 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1160 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 765 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 751 Number of spheres polar: 245, nonpolar: 292, out of current total: 751 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.12462 44.79742 29.18077 49.05800 63.14553 83.11117 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 430 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 368 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 346 Spheres center of coords (x y z): 33.6003854913294 39.3081886416185 74.3482843641619 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.93778133852826 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 28