usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 44.7446956521739 6.61608695652174 13.2326086956522 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 975 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 553 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 552 Number of spheres polar: 136, nonpolar: 227, out of current total: 552 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.75881 54.73323 -3.38230 16.59294 3.55255 23.21122 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 343 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 304 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 271 Spheres center of coords (x y z): 43.2007885239853 9.31077376383763 10.670592103321 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.22314177528509 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 23