usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -36.5955925925926 25.8431851851852 67.472 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1184 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 734 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 734 Number of spheres polar: 231, nonpolar: 261, out of current total: 734 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -46.59043 -26.64701 15.89161 35.84134 57.77378 77.47162 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 430 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 378 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 302 Spheres center of coords (x y z): -39.173489602649 27.9666102980132 69.1326850993378 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.25041847586309 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 22 Final number of spheres that are from crystallographic ligand: 27