usefragsph not on
There are 13 ligand heavy atoms
Ligand center of coords (x y z): 44.6495384615385 5.72669230769231 15.2193076923077
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1087
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 568
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 568
Number of spheres polar: 170, nonpolar: 260, out of current total: 568
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.66600 54.59167 -4.11402 15.58286 5.22486 25.19753
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 187
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 161
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 138
Spheres center of coords (x y z): 42.199138768116 9.3314018115942 11.2456242028985
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.71741565707571
Final number of output spheres is: 45
Number of polar spheres: 24
Number of nonpolar spheres: 17
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 13