usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): -3.74683333333333 10.5045 -22.4295833333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 905 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 625 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 625 Number of spheres polar: 173, nonpolar: 257, out of current total: 625 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.67389 6.20914 0.52300 20.48970 -32.42429 -13.04891 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 254 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 213 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 207 Spheres center of coords (x y z): -3.01875758454106 8.93942888888889 -26.0745181642512 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.68458466309775 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 24