usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 20.6635384615385 54.9896153846154 17.2133846153846 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 914 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 488 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 476 Number of spheres polar: 133, nonpolar: 195, out of current total: 476 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.01426 30.64825 45.19900 64.32078 7.32488 27.02709 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 197 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 171 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 156 Spheres center of coords (x y z): 23.4983999358974 55.4918276923077 19.4937392307692 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.75429711676262 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 26