usefragsph not on
There are 42 ligand heavy atoms
Ligand center of coords (x y z): 7.82242857142857 4.51657142857143 12.0904285714286
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2388
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 971
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 971
Number of spheres polar: 311, nonpolar: 505, out of current total: 971
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.29671 17.74705 -5.25300 14.50034 2.10300 21.54537
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 487
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 430
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 413
Spheres center of coords (x y z): 9.50132539951574 5.1869899031477 8.80385750605327
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.65177915904589
Final number of output spheres is: 60
Number of polar spheres: 18
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 42