usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 38.9822352941176 0.544 155.520351176471 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1555 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 760 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 760 Number of spheres polar: 236, nonpolar: 400, out of current total: 760 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 29.41684 48.97977 -9.43016 10.51570 145.59233 165.50200 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 235 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 185 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 128 Spheres center of coords (x y z): 41.833589921875 1.58366609375 152.47245203125 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.65927740657228 Final number of output spheres is: 45 Number of polar spheres: 5 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 17