usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 7.33261904761905 0.171857142857143 13.9588095238095 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1487 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 691 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 691 Number of spheres polar: 193, nonpolar: 384, out of current total: 691 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.50088 17.25601 -9.77906 9.94200 3.98200 23.74628 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 220 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 181 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 152 Spheres center of coords (x y z): 10.0347438157895 -3.28387171052632 12.8461857894737 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.84070860708183 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 21