usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 57.7529310344828 -23.7613103448276 53.5876551724138 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1880 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 917 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 914 Number of spheres polar: 246, nonpolar: 458, out of current total: 914 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 47.87431 67.72601 -33.75146 -13.76740 44.91227 63.58522 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 509 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 441 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 400 Spheres center of coords (x y z): 58.683994575 -23.93405495 56.8001823 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.78634959677744 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 29