usefragsph not on
There are 29 ligand heavy atoms
Ligand center of coords (x y z): 6.39868965517241 0.523379310344828 12.839275862069
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2190
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1004
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1004
Number of spheres polar: 331, nonpolar: 555, out of current total: 1004
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.28753 16.38626 -9.45875 10.50085 2.86325 22.82903
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 455
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 395
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 383
Spheres center of coords (x y z): 9.22760592689295 -0.292299608355091 11.2222788511749
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.66407976499448
Final number of output spheres is: 60
Number of polar spheres: 9
Number of nonpolar spheres: 41
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 29