usefragsph not on
There are 21 ligand heavy atoms
Ligand center of coords (x y z): 39.417 0.85647619047619 154.300378571429
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1578
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 812
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 812
Number of spheres polar: 269, nonpolar: 409, out of current total: 812
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 29.43423 49.41586 -9.14341 10.76822 144.30377 164.27266
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 417
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 358
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 246
Spheres center of coords (x y z): 40.1969997560975 2.61193520325203 156.806951382114
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.97232576120305
Final number of output spheres is: 60
Number of polar spheres: 7
Number of nonpolar spheres: 38
Number of spheres that are near neither polar nor nonpolar receptor atoms: 15
Final number of spheres that are from crystallographic ligand: 21