usefragsph not on
There are 31 ligand heavy atoms
Ligand center of coords (x y z): 7.8851935483871 0.619096774193548 13.2303870967742
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2267
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 775
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 770
Number of spheres polar: 177, nonpolar: 470, out of current total: 770
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.03279 17.84866 -9.34655 10.60089 3.23692 23.21012
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 407
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 357
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 324
Spheres center of coords (x y z): 10.3512911728395 1.20288944444444 11.1735409259259
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.49172086854657
Final number of output spheres is: 60
Number of polar spheres: 11
Number of nonpolar spheres: 40
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 31