usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): 70.796625 47.548375 44.0735 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1272 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 724 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 724 Number of spheres polar: 273, nonpolar: 372, out of current total: 724 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 60.80613 80.59035 37.60800 57.50288 36.52652 53.99800 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 375 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 339 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 292 Spheres center of coords (x y z): 69.5138150000001 44.7998209246575 45.2191984589041 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.40946630585631 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 8