usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 1.37373076923077 -9.09969230769231 15.6826538461538 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 3333 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 637 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 637 Number of spheres polar: 207, nonpolar: 324, out of current total: 637 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.62164 11.35261 -19.09414 -4.48586 5.68935 25.68238 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 328 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 286 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 230 Spheres center of coords (x y z): 2.03196569565217 -11.0298241304348 16.5608919565217 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.70288485242956 Final number of output spheres is: 60 Number of polar spheres: 10 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 26