usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 14.7406111111111 38.3757222222222 -81.4725 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 962 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 594 WARNING: removing a crystallographic sphere that is distance 0.850811377450963 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 593 Number of spheres polar: 245, nonpolar: 170, out of current total: 593 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.99975 24.72503 28.40611 45.82310 -90.86111 -71.49539 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 333 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 283 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 246 Spheres center of coords (x y z): 15.9450276829268 36.8715589024391 -78.5294070325203 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.16913714456775 Final number of output spheres is: 60 Number of polar spheres: 36 Number of nonpolar spheres: 11 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 17