usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 14.8573684210526 38.3294210526316 -81.2067368421053 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1006 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 614 WARNING: removing a crystallographic sphere that is distance 0.87781091357991 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 613 Number of spheres polar: 246, nonpolar: 235, out of current total: 613 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.10624 24.76229 28.36188 46.10815 -90.54394 -71.23000 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 212 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 169 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 161 Spheres center of coords (x y z): 16.1536368944099 37.3648359006211 -77.7142238509316 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.19471455587822 Final number of output spheres is: 45 Number of polar spheres: 27 Number of nonpolar spheres: 10 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 18