usefragsph not on
There are 12 ligand heavy atoms
Ligand center of coords (x y z): -5.91883333333333 21.9418333333333 7.02933333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1028
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 719
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 716
Number of spheres polar: 311, nonpolar: 222, out of current total: 716
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -14.56338 4.06663 15.18023 31.92706 -2.94489 17.01734
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 368
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 310
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 275
Spheres center of coords (x y z): -4.3138288 22.4883724 4.60043981818182
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.15818371132993
Final number of output spheres is: 60
Number of polar spheres: 31
Number of nonpolar spheres: 6
Number of spheres that are near neither polar nor nonpolar receptor atoms: 23
Final number of spheres that are from crystallographic ligand: 12