usefragsph not on
There are 12 ligand heavy atoms
Ligand center of coords (x y z): -6.63225 23.385 4.31258333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1020
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 633
WARNING: removing a crystallographic sphere that is distance 1.05816492098349 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 625
Number of spheres polar: 231, nonpolar: 186, out of current total: 625
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -16.07413 3.28597 14.85124 33.34554 -5.50154 14.07400
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 345
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 305
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 297
Spheres center of coords (x y z): -4.54805225589226 23.0209492592593 3.14776326599327
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.60115935670596
Final number of output spheres is: 60
Number of polar spheres: 25
Number of nonpolar spheres: 7
Number of spheres that are near neither polar nor nonpolar receptor atoms: 28
Final number of spheres that are from crystallographic ligand: 11