usefragsph not on There are 12 ligand heavy atoms Ligand center of coords (x y z): 81.6208333333333 75.0015 97.9635 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 933 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 522 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 522 Number of spheres polar: 247, nonpolar: 162, out of current total: 522 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 71.66178 91.40563 65.03800 84.89117 88.00433 107.89116 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 176 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 135 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 121 Spheres center of coords (x y z): 80.2629438842975 72.0032719834711 100.69600553719 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.2923585042173 Final number of output spheres is: 45 Number of polar spheres: 25 Number of nonpolar spheres: 10 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 12