usefragsph not on
There are 10 ligand heavy atoms
Ligand center of coords (x y z): 83.0233 75.7412 99.7167
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 845
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 519
WARNING: removing a crystallographic sphere that is distance 1.10871096323613 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 517
Number of spheres polar: 256, nonpolar: 143, out of current total: 517
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 73.04957 91.51654 65.74575 85.73292 89.72167 109.59679
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 281
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 246
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 229
Spheres center of coords (x y z): 80.4574055895197 73.3245960262009 101.057993580786
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.16817483127767
Final number of output spheres is: 60
Number of polar spheres: 30
Number of nonpolar spheres: 17
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 9