usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 110.633083333333 -77.3184166666667 -50.4980833333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1332 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 655 WARNING: removing a crystallographic sphere that is distance 0.869772384017793 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 651 Number of spheres polar: 226, nonpolar: 251, out of current total: 651 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 100.84818 119.60220 -87.28554 -67.32693 -57.16428 -40.49956 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 220 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 182 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 173 Spheres center of coords (x y z): 111.029363699422 -80.4555686127168 -49.1352084971098 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.17518110838158 Final number of output spheres is: 45 Number of polar spheres: 24 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 23