usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): -4.1999 -30.8989 156.377998 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 89 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 84 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 84 Number of spheres polar: 48, nonpolar: 24, out of current total: 84 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.47653 3.44100 -32.85200 -22.29189 146.39580 159.86795 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 53 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 48 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 42 Final number of output spheres is: 42 Number of polar spheres: 24 Number of nonpolar spheres: 11 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 10