usefragsph not on
There are 31 ligand heavy atoms
Ligand center of coords (x y z): 41.1851290322581 50.9217419354839 35.8317419354839
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1419
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 746
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 745
Number of spheres polar: 276, nonpolar: 252, out of current total: 745
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 31.37234 51.15479 40.93555 60.88675 26.19066 45.83022
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 406
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 348
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 331
Spheres center of coords (x y z): 40.9286285196374 52.1777525981873 38.751468429003
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.7127884173891
Final number of output spheres is: 60
Number of polar spheres: 34
Number of nonpolar spheres: 13
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 31