usefragsph not on
There are 29 ligand heavy atoms
Ligand center of coords (x y z): 3.08468965517241 0.24048275862069 4.83313793103448
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1077
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 688
WARNING: removing a crystallographic sphere that is distance 0.951699532415562 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 686
Number of spheres polar: 257, nonpolar: 264, out of current total: 686
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.85845 12.23340 -9.71414 10.02400 -2.66691 14.77126
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 381
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 326
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 317
Spheres center of coords (x y z): 2.76932640378549 -1.31206987381704 4.94302362776026
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.71777717559612
Final number of output spheres is: 60
Number of polar spheres: 36
Number of nonpolar spheres: 11
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 28