usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 14.1207692307692 -2.34603846153846 37.0282692307692 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 983 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 671 WARNING: removing a crystallographic sphere that is distance 1.1017572327877 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 670 Number of spheres polar: 299, nonpolar: 232, out of current total: 670 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.48070 23.94417 -9.53527 7.58317 27.10971 46.99846 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 236 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 170 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 164 Spheres center of coords (x y z): 13.6344099390244 -1.18983890243902 38.7273232926829 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.06110289918145 Final number of output spheres is: 45 Number of polar spheres: 27 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 25