usefragsph not on
There are 29 ligand heavy atoms
Ligand center of coords (x y z): 32.0753103448276 6.87206896551724 60.6364827586207
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1671
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 722
WARNING: removing a crystallographic sphere that is distance 0.955415093035484 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 706
Number of spheres polar: 278, nonpolar: 250, out of current total: 706
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.29928 42.06997 -3.11349 16.62761 50.67150 67.82268
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 389
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 349
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 345
Spheres center of coords (x y z): 33.6004206956522 5.66146936231884 59.072585884058
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.70938633325451
Final number of output spheres is: 60
Number of polar spheres: 33
Number of nonpolar spheres: 18
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 28