usefragsph not on
There are 26 ligand heavy atoms
Ligand center of coords (x y z): 39.3958461538462 49.0442692307692 38.4903461538462
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1389
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 744
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 727
Number of spheres polar: 264, nonpolar: 266, out of current total: 727
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 29.43160 49.36830 39.90495 59.01819 31.12469 48.48835
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 396
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 350
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 343
Spheres center of coords (x y z): 40.726246180758 50.9500041107872 39.8716258309038
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.71164208097362
Final number of output spheres is: 60
Number of polar spheres: 38
Number of nonpolar spheres: 10
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 26