usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 40.0033214285714 50.3824285714286 36.77
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1170
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 729
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 725
Number of spheres polar: 277, nonpolar: 277, out of current total: 725
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 30.81236 49.99974 40.45823 60.36932 26.80857 46.66154
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 403
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 338
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 328
Spheres center of coords (x y z): 40.3171619512195 51.9934129573171 38.3781845426829
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.45761872539122
Final number of output spheres is: 60
Number of polar spheres: 32
Number of nonpolar spheres: 18
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 28