usefragsph not on
There are 24 ligand heavy atoms
Ligand center of coords (x y z): 39.933 50.5920833333333 36.0958333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1039
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 667
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 664
Number of spheres polar: 245, nonpolar: 252, out of current total: 664
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 31.25302 49.92926 40.75721 60.57456 26.11537 46.04492
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 359
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 303
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 285
Spheres center of coords (x y z): 40.4024104561403 52.3704181754386 38.4020257192982
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.51397450237421
Final number of output spheres is: 60
Number of polar spheres: 34
Number of nonpolar spheres: 18
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 24