usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 34.8201612903226 5.52774193548387 63.5142258064516 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1302 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 786 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 780 Number of spheres polar: 306, nonpolar: 310, out of current total: 780 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 26.00963 44.78241 -4.31900 15.36994 53.51973 73.49017 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 254 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 207 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 196 Spheres center of coords (x y z): 34.8355692346939 4.44549704081633 60.5532071428572 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.74323348734149 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 31