usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 36.0855833333333 54.10975 92.9495416666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1039 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 596 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 595 Number of spheres polar: 194, nonpolar: 220, out of current total: 595 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 26.10153 45.83994 47.17625 64.09922 84.69524 102.87171 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 209 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 179 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 158 Spheres center of coords (x y z): 33.8100696202532 56.4674542405063 94.8008375949367 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.64119993041306 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 24