usefragsph not on
There are 30 ligand heavy atoms
Ligand center of coords (x y z): -4.0224 4.4995 -3.9825
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1062
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 668
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 663
Number of spheres polar: 229, nonpolar: 270, out of current total: 663
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.77777 5.97423 -5.47674 14.48258 -13.95036 3.19343
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 229
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 194
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 188
Spheres center of coords (x y z): -3.88703973404256 2.13973244680851 -4.82305824468085
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.48057086824359
Final number of output spheres is: 45
Number of polar spheres: 22
Number of nonpolar spheres: 11
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 30