usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 15.8705625 54.73159375 22.292 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1384 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 811 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 808 Number of spheres polar: 311, nonpolar: 288, out of current total: 808 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.95394 25.83639 45.05239 64.56644 12.36323 30.34204 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 282 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 219 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 206 Spheres center of coords (x y z): 17.3313302912621 55.8732501941748 20.5697565048544 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.48056105957926 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 32