usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -10.2651538461538 16.4842692307692 -8.94330769230769 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1078 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 689 WARNING: removing a crystallographic sphere that is distance 0.844990532491341 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 687 Number of spheres polar: 278, nonpolar: 231, out of current total: 687 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -20.16559 -0.31544 6.48990 26.46863 -18.93845 1.05598 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 231 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 197 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 190 Spheres center of coords (x y z): -10.2076829473684 19.3813592631579 -8.15345615789474 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.6741656867968 Final number of output spheres is: 45 Number of polar spheres: 28 Number of nonpolar spheres: 9 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 25