usefragsph not on
There are 31 ligand heavy atoms
Ligand center of coords (x y z): 41.1951612903226 51.1001935483871 35.7521612903226
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1351
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 790
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 787
Number of spheres polar: 317, nonpolar: 269, out of current total: 787
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 32.50069 51.18751 41.10061 61.08276 25.76600 45.73050
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 428
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 368
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 345
Spheres center of coords (x y z): 41.4258840579711 52.4232500289855 38.381084057971
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.50372090681592
Final number of output spheres is: 60
Number of polar spheres: 28
Number of nonpolar spheres: 19
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 31