usefragsph not on
There are 31 ligand heavy atoms
Ligand center of coords (x y z): 39.5635806451613 49.3529032258064 38.2674838709677
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1524
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 753
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 737
Number of spheres polar: 289, nonpolar: 260, out of current total: 737
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 29.59067 49.54808 39.46333 59.30692 30.78290 48.22260
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 276
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 219
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 208
Spheres center of coords (x y z): 40.8841245673077 51.136913125 40.1159804326923
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.39230650739528
Final number of output spheres is: 45
Number of polar spheres: 24
Number of nonpolar spheres: 12
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 31