usefragsph not on
There are 30 ligand heavy atoms
Ligand center of coords (x y z): 39.6736666666667 49.2562 38.3405
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1468
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 722
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 717
Number of spheres polar: 288, nonpolar: 234, out of current total: 717
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 30.80475 49.61518 39.27628 59.25464 29.78538 48.33028
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 437
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 362
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 355
Spheres center of coords (x y z): 40.8647081690141 51.1012717746479 40.2569065633803
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.48461788258553
Final number of output spheres is: 60
Number of polar spheres: 33
Number of nonpolar spheres: 15
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 30