usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 18.3381153846154 18.0454230769231 34.0694615384615 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1270 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 660 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 655 Number of spheres polar: 211, nonpolar: 269, out of current total: 655 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.36177 28.22097 8.07668 28.03710 24.08745 42.86702 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 387 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 334 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 305 Spheres center of coords (x y z): 16.2750642295082 16.7676213770492 32.6031564262295 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.84062297054585 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 26