usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 42.782037037037 18.6278888888889 14.1918888888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1322 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 815 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 813 Number of spheres polar: 276, nonpolar: 301, out of current total: 813 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 32.79292 52.77451 8.63918 28.46939 4.20141 24.16878 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 451 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 386 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 376 Spheres center of coords (x y z): 44.8918981117021 16.1050108244681 15.0370071542553 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.23117069832973 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 27