usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 42.2667083333333 1.69233333333333 14.6845416666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1129 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 689 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 687 Number of spheres polar: 234, nonpolar: 256, out of current total: 687 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 32.31984 52.26295 -8.23764 11.68744 4.95071 24.66413 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 236 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 198 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 187 Spheres center of coords (x y z): 44.2664712834225 -0.670894919786096 15.8809822459893 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.772005505071 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 24