usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 49.052875 49.07909375 33.9425625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1535 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 828 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 824 Number of spheres polar: 284, nonpolar: 307, out of current total: 824 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 39.14620 59.03681 39.08196 59.05670 23.98010 43.32001 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 317 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 241 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 235 Spheres center of coords (x y z): 50.4115726808511 49.9414307234043 31.6732305531915 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.77011898829034 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 32