usefragsph not on
There are 27 ligand heavy atoms
Ligand center of coords (x y z): 40.5846666666667 50.5414074074074 36.1457407407407
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1236
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 744
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 742
Number of spheres polar: 302, nonpolar: 276, out of current total: 742
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 30.77659 50.58197 40.91111 60.52544 26.18910 46.04178
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 391
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 331
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 311
Spheres center of coords (x y z): 41.2317709646302 52.4158857234727 38.1981253376206
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.52974256487962
Final number of output spheres is: 60
Number of polar spheres: 35
Number of nonpolar spheres: 17
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 27