usefragsph not on
There are 23 ligand heavy atoms
Ligand center of coords (x y z): 39.3909565217391 50.4325217391304 35.9102173913043
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1028
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 693
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 690
Number of spheres polar: 272, nonpolar: 268, out of current total: 690
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 29.54592 49.36358 45.03011 60.38027 25.92544 45.84799
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 348
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 301
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 288
Spheres center of coords (x y z): 40.2566604166666 52.33937875 38.0481392708333
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.52895288132691
Final number of output spheres is: 60
Number of polar spheres: 31
Number of nonpolar spheres: 16
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 23