usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 47.1937037037037 51.3318518518519 34.0391111111111 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1384 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 697 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 692 Number of spheres polar: 243, nonpolar: 279, out of current total: 692 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 37.26734 57.12943 42.39429 61.33126 24.05208 41.38190 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 403 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 350 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 327 Spheres center of coords (x y z): 49.0246295718655 52.4581988073395 32.3742947706422 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.62573112623139 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 27