usefragsph not on
There are 27 ligand heavy atoms
Ligand center of coords (x y z): 46.9184074074074 50.4911851851852 34.3589259259259
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1376
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 720
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 713
Number of spheres polar: 291, nonpolar: 242, out of current total: 713
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 37.26306 56.90629 40.52081 60.48766 24.36452 43.02359
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 246
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 209
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 185
Spheres center of coords (x y z): 48.1240574054054 51.4921222162162 32.1229557837838
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.61012579013683
Final number of output spheres is: 45
Number of polar spheres: 20
Number of nonpolar spheres: 17
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 27