usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 17.9005384615385 -34.7454230769231 16.4665384615385 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 891 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 580 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 579 Number of spheres polar: 216, nonpolar: 197, out of current total: 579 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.92662 27.74049 -44.72216 -24.80899 6.83726 26.10826 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 232 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 174 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 161 Spheres center of coords (x y z): 16.7816254037267 -32.917089378882 17.4563756521739 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.01536181606369 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 26